species:   Scscl
pid:       PID1704
parent:    Ssc-milR-180
paralog:   
locus:     NW_001820832.1:1105175-1105253
matures:   ['UAGCAUUUUCUUUGCCCAGAGC', 'UCUUUCGAGGGAGAUGAUGUU']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820832.1:1105175-1105253

9 out of bounds
11 alignments
11 proper strand
9 stranded perfect matches

    ************************                        ***********************    
UCAAAUUGAAUAGCAUUUUCUUUGCCCAGAGCAUAUAUCUGUUUAGUUGCUCUUUCGAGGGAGAUGAUGUUCUUUUUCC
..(((..(((((.(((((((((((...((((((..((......))..))))))..))))))))))).)))))..)))..
----------UAGCAUUUUCUUUGCCCAGAGC----------------------------------------------- l=22 a=0 c
--------------------------------------------------UCUUUCGAGGGAGAUGAUGUU-------- l=21 a=0 c*
------------------------------------------------------UCGAGGGAGAUGAUGUUCUUU---- l=21 a=1 ma
------UGAAUAGCAUUUUCUUUGCCCA--------------------------------------------------- l=22 a=0 ma*

------------------------------------------------------UCGAGGGAGAUGAUGUUCUU----- l=20 a=1 
------------------------------------------------------UCGAGGGAGAUGAUGUUCUUU---- l=21 a=1 (ma)
------------------------------------------------------UCGAGGGAGAUGAUGUUCUUa---- l=21 a=1 
-----------------------------------------------------UUCGAGGGAGAUGAUGUUCUU----- l=21 a=1 
----------------------------------------------------UUUCGAGGGAGAUGAUGUUu------- l=20 a=1 
----------------------------------------------------UUUCGAGGGAGAUGAUGUUCU------ l=21 a=1 
----------------------------------------------------UUUCGAGGGAGAUGAUGUUCUU----- l=22 a=1 
-------------------------------------------UAGUUGCUCUUUCGAGGGAGA--------------- l=21 a=1 
-------------------------------------UCUGUUUAGUUGCUCUUUCGAG-------------------- l=22 a=1 
-----------------------------------UAUCUGUUUAGUUGCUCUUU------------------------ l=20 a=1 
---------------------------------UAUAUCUGUUUAGUUGCUCUUU------------------------ l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-110111101100
fn-111
